STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T4K22.5Probable pectate lyase 4. (368 aa)    
Predicted Functional Partners:
MYH19.70
Pectin lyase-like superfamily protein.
   
 
 0.730
PME53
Probable pectinesterase 53; Acts in the modification of cell walls via demethylesterification of cell wall pectin; Belongs to the pectinesterase family.
  
 
 0.719
QRT1
Pectinesterase QRT1; Pectinesterase required for cell type-specific pectin degradation to separate microspores.
  
 
 0.719
PME4
Pectinesterase 4; Acts in the modification of cell walls via demethylesterification of cell wall pectin. Plays an important role in growth of pollen tubes in female floral tissues, possibly via enhancing the interaction between the pollen tube and female floral tissues by modification of the cell walls; In the N-terminal section; belongs to the PMEI family.
   
 
  0.713
PME42
Probable pectinesterase/pectinesterase inhibitor 42; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the C-terminal section; belongs to the pectinesterase family.
  
 
  0.712
PME19
Probable pectinesterase/pectinesterase inhibitor 19; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the C-terminal section; belongs to the pectinesterase family.
  
 
  0.711
PME40
Probable pectinesterase/pectinesterase inhibitor 40; Acts in the modification of cell walls via demethylesterification of cell wall pectin; In the N-terminal section; belongs to the PMEI family.
  
 
  0.710
PPME1
Pectinesterase PPME1; Acts in the modification of cell walls via demethylesterification of cell wall pectin. Involved in the pollen tube growth and determination of pollen tube morphology. Belongs to the pectinesterase family.
   
 
 0.710
F8D20.180
Pectin lyase-like superfamily protein.
   
 
  0.696
F18O19.3
Probable polygalacturonase At2g43860.
     
 0.692
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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