STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F25P12.85Pectin lyase-like superfamily protein. (434 aa)    
Predicted Functional Partners:
MVA3.19
Plasma-membrane choline transporter family protein; Belongs to the CTL (choline transporter-like) family.
   
  
 0.816
MGO3.11
B3 domain-containing protein At5g60130.
    
 
 0.809
F19K16.25
CASP-like protein (DUF1677).
   
  
 0.808
F28K19.25
Uncharacterized protein.
      
 0.807
K17N15.8
Ubiquitin carboxyl-terminal hydrolase-related protein.
      
 0.807
T2E22.21
Polynucleotidyl transferase, ribonuclease H-like superfamily protein.
      
 0.807
F25L23.90
Putative F-box/LRR-repeat protein At3g59230.
      
 0.807
PAP14
Probable inactive purple acid phosphatase 14; Belongs to the metallophosphoesterase superfamily. Purple acid phosphatase family.
   
  
 0.803
MTG10.3
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein.
      
 0.800
SEC1A-2
Berberine bridge enzyme-like 1; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.
    
 
 0.797
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
Server load: low (26%) [HD]