STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MORF9Multiple organellar RNA editing factor 9, chloroplastic; Involved in organellar RNA editing. Required for the processing of multiple editing sites in plastids. Belongs to the MORF family. (232 aa)    
Predicted Functional Partners:
PPOX1
Protoporphyrinogen oxidase 1, chloroplastic; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
   
 
 0.882
ORRM6
Organelle RRM domain-containing protein 6, chloroplastic; Involved in C-to-U editing of chloroplastic RNA. Required for the photosynthetic subunit psbF transcript editing in chloroplast.
   
  
 0.867
DYW1
Pentatricopeptide repeat-containing protein DWY1, chloroplastic; Plays a major role in single RNA editing events in chloroplasts. Acts as a site-recognition transacting factor involved in the edition of the site 1 of ndhD (ndhD-1 site corresponding to cytidine-2), which is a plastid-encoded subunit of the NADH- plastoquinone oxidoreductase. The interaction with CRR4 is required for its function in editing the ndhD-1 site; Belongs to the PPR family. PCMP-H subfamily.
   
  
 0.830
VAR3
Zinc finger protein VAR3, chloroplastic; Probable component of some protein complex required for chloroplast and palisade cell development. Involved in C-to-U editing of chloroplastic RNA. Controls a large number of chloroplastic editing sites. Binds the editing recognition trans- factors PCMP-H51/CRR28 and PCMP-H12/OTP82.
   
  
 0.826
PCMP-H90
Pentatricopeptide repeat-containing protein At5g13270, chloroplastic.
      
 0.821
ndhD
NAD(P)H-quinone oxidoreductase chain 4, chloroplastic; Belongs to the complex I subunit 4 family.
      
 0.795
PCMP-H38
Pentatricopeptide repeat-containing protein At5g48910; Belongs to the PPR family. PCMP-H subfamily.
   
  
 0.791
PCMP-H83
Pentatricopeptide repeat-containing protein At3g63370, chloroplastic; Involved in RNA editing event in chloroplasts. Required for the editing of a single site in rps14 transcript.
   
  
 0.791
PCMP-H12
Pentatricopeptide repeat-containing protein At1g08070, chloroplastic; Involved in multiple sites RNA editing events in chloroplasts. Involved in the editing of the site 9 of ndhB (ndhB-9) and site 1 of ndhG (ndhG-1) transcripts, which are two plastid-encoded subunits of the chloroplast NAD(P)H dehydrogenase (NDH) complex. Not essential for the activity of the NDH complex of the photosynthetic electron transport chain.
      
 0.778
PCMP-H52
Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial; Involved in C-to-U editing of mitochondrial RNA. Required specifically for editing the mitochondrial NAD2 transcript.
      
 0.772
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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