STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF1Splicing factor-like protein 1; Necessary for the splicing of pre-mRNA. Required during development and for abscisic acid (ABA) responses. Belongs to the BBP/SF1 family. (804 aa)    
Predicted Functional Partners:
MSJ1.11
Nuclear protein-like.
   
 0.977
T26B15.16
Hydroxyproline-rich glycoprotein family protein.
   
 0.964
CDC5
Cell division cycle 5-like protein; Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. Belongs to the CEF1 family.
   
 
 0.953
ATO
Splicing factor SF3a60 homolog; Splicing factor homolog to SF3a60 that may be involved in pre-spliceosome formation. Is necessary for gametic cell fate determination; Belongs to the SF3A3 family.
   
 0.946
RH42
DEAD-box ATP-dependent RNA helicase 42; Helicase required for pre-mRNA splicing, cold-responsive gene regulation and cold tolerance; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
   
 0.944
F23C21.4
U2 snRNP auxiliary factor, large subunit, putative; 15147-15692.
   
 
 0.935
F4IVU7_ARATH
RNA-binding (RRM/RBD/RNP motifs) family protein.
   
 
 0.933
RH45
DEAD-box ATP-dependent RNA helicase 45; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
   
 0.931
SR34
Serine/arginine-rich-splicing factor SR34; General splicing factor. Can promote splice site selection in vitro presumably by antagonizing the effects of the A1 heterogeneous nuclear ribonucleoprotein. May have an essential function during early plant development; Belongs to the splicing factor SR family. SR subfamily.
   
 
 0.919
U2AF65A
Splicing factor U2af large subunit A; Necessary for the splicing of pre-mRNA; Belongs to the splicing factor SR family.
   
 
0.904
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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