STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCMP-H76Pentatricopeptide repeat-containing protein At3g47530; Belongs to the PPR family. PCMP-H subfamily. (591 aa)    
Predicted Functional Partners:
F5H14.31
Pentatricopeptide repeat (PPR) superfamily protein.
      
 0.963
VPS9B
Vacuolar protein sorting-associated 9A-like protein.
      
 0.928
EMB1444
Transcription factor EMB1444; Transcription factor that may regulate root development.
   
  
 0.901
MJG19.10
Pentatricopeptide repeat-containing protein At3g13150; Belongs to the PPR family. P subfamily.
   
  
0.432
F14P22.180
Pentatricopeptide repeat-containing protein At3g58590; Belongs to the PPR family. P subfamily.
  
  
0.404
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.