STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6D8.13F-box/LRR-repeat protein At1g52650. (465 aa)    
Predicted Functional Partners:
T9L24.49
RNA-binding (RRM/RBD/RNP motifs) family protein.
      
 0.927
T30E16.26
Putative F-box protein At1g59675.
      
 0.927
MKD10.60
Late embryogenesis abundant protein (LEA) family protein.
      
 0.926
T15F16.12
Coatomer subunit zeta-3; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (By similarity). The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-disso [...]
      
 0.912
RIE1
E3 ubiquitin protein ligase RIE1; Probable E3 ubiquitin-protein ligase required for embryo development.
      
 0.823
REM16
B3 domain-containing protein REM16.
      
 0.796
A8MQ81_ARATH
ECA1 gametogenesis related family protein.
      
 0.794
A8MRI4_ARATH
ECA1 gametogenesis related family protein.
      
 0.794
WBC30
Putative white-brown complex homolog protein 30.
      
 0.791
ECA1
Calcium-transporting ATPase 1, endoplasmic reticulum-type; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the endoplasmic reticulum lumen. Also regulates manganese ion homeostasis by pumping it into endomembrane compartments. Can also transport zinc.
      
 0.784
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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