STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALMT7Aluminum-activated malate transporter 7; Malate transporter; Belongs to the aromatic acid exporter (TC 2.A.85) family. (506 aa)    
Predicted Functional Partners:
F4J6E0_ARATH
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein.
      
 0.892
K16L22.8
Probable GABA transporter 2; May be involved in the transport of GABA; Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.2) subfamily.
      
 0.800
GAT1
GABA transporter 1; High affinity gamma-aminobutyric acid (GABA) transporter probably involved in GABA uptake into cells. When expressed in a heterologous system (Xenopus oocytes), imports GABA, butylamine, beta- and L-Alanine, 5-aminovaleric acid, 6-aminocaproic acid and 8- aminocaprylic acid, but does not mediate the transport of proline or glycine betaine.
      
 0.654
TAF9
Transcription initiation factor TFIID subunit 9; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription.
   
   0.638
TAF10
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Involved in osmotic stress adaptation during the germination stage and in gene expression related to meristem activity and leaf development; Belongs to the TAF10 family.
    
 
 0.630
SGF11
SAGA-associated factor 11; Component of a deubiquitination module (DUB module) that specifically deubiquinates monoubiquinated histone H2B (H2Bub). Does not seem to be a component of the TREX-2 complex. Seems to act independently of the SAGA multiprotein complex. The DUB module is responsible for the major H2Bub deubiquitinase activity in Arabidopsis.
    
 
 0.626
SPL6
Squamosa promoter-binding-like protein 6; Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
      
 0.572
T13L16.5
Phosphatidylinositol 3-and 4-kinase family protein with FAT domain-containing protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.553
F4JPL2_ARATH
Phosphotransferases/inositol or phosphatidylinositol kinase; Belongs to the PI3/PI4-kinase family.
   
 
 0.553
APO2
APO protein 2, chloroplastic; May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts; Belongs to the APO family.
      
 0.543
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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