STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S1FA1DNA-binding protein S1FA1; DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. (76 aa)    
Predicted Functional Partners:
Q9LSA1_ARATH
Translation elongation factor EF1B/ribosomal protein S6 family protein.
   
 0.862
RPL5B
60S ribosomal protein L5-2; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throug [...]
   
 
 0.822
RPL5A
60S ribosomal protein L5-1; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome throug [...]
   
 
 0.822
RPL23AA
60S ribosomal protein L23a-1; Binds to a specific region on the 26S rRNA.
   
 
 0.796
RPL23AB
60S ribosomal protein L23a-2; Binds to a specific region on the 26S rRNA; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.796
GEBP
GLABROUS1 enhancer-binding protein; DNA-binding protein, which specifically recognizes the GL1 enhancer sequence. May be involved in leaf initiation. May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses. Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication. May play a role in plant defense. Belongs to the GeBP family.
      
 0.792
RPS9M
30S ribosomal protein S9, mitochondrial; Mitochondrial ribosomal protein required for central cell maturation. May work together with PIA2 in controlling female gametophyte development, possibly by regulating the expression of some mitochondrial proteins.
  
 0.790
RPS9
30S ribosomal protein S9, chloroplastic; Binds directly to 16S ribosomal RNA; Belongs to the universal ribosomal protein uS9 family.
  
 0.790
SPL
Protein SPOROCYTELESS; Transcriptional regulator of sporocyte development. Acts as an adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors. Required for nucellus and embryo sac development. Plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes during ovule development. Involved in establishing the prospective chalaza of the ovule and in controlling the cell number and the length of the funiculus, and is required for the development of the integuments. Required, with BEL1, for cytokinin-induced PIN [...]
      
 0.785
BZIP8
Basic leucine zipper 8; Belongs to the bZIP family.
      
 0.784
Your Current Organism:
Arabidopsis thaliana
NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress
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