STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERCC6ERCC excision repair 6, chromatin remodeling factor. (1488 aa)    
Predicted Functional Partners:
ERCC8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 0.989
XPA
XPA, DNA damage recognition and repair factor.
    
 0.988
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.987
ENSSSUP00005025374
annotation not available
    
 0.987
ENSSSUP00005024417
annotation not available
    
 0.982
ENSSSUP00005024649
annotation not available
    
 0.982
POLR2B
RNA polymerase II subunit B.
    
 0.976
POLR2I
RNA polymerase II subunit I.
    
 0.975
DDB1
Damage specific DNA binding protein 1.
    
 0.970
POLR2D
RNA polymerase II subunit D.
    
 0.965
Your Current Organism:
Suricata suricatta
NCBI taxonomy Id: 37032
Other names: S. suricatta, meerkat, slender-tailed meerkat, suricate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.