STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)    
Predicted Functional Partners:
IK
IK cytokine.
   
 0.999
MFAP1
Microfibril associated protein 1.
   
 0.997
SF3B3
Splicing factor 3b subunit 3.
   
 0.995
PRPF38A
pre-mRNA processing factor 38A.
   
 0.992
SF3A2
Splicing factor 3a subunit 2.
    
 0.991
PRPF6
pre-mRNA processing factor 6.
    
 0.991
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.989
LSM8
LSM8 homolog, U6 small nuclear RNA associated.
   
  0.987
PRPF8
pre-mRNA processing factor 8.
    
 0.987
ZMAT2
Zinc finger matrin-type 2.
    
 0.986
Your Current Organism:
Suricata suricatta
NCBI taxonomy Id: 37032
Other names: S. suricatta, meerkat, slender-tailed meerkat, suricate
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.