STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCMTD1protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1. (357 aa)    
Predicted Functional Partners:
ENSSSUP00005022997
annotation not available
      
 0.764
PUS7
Pseudouridine synthase 7.
     
 0.760
SCAF11
SR-related CTD associated factor 11.
      
 0.645
PXDNL
Peroxidasin like.
      
 0.629
MAPRE1
Microtubule associated protein RP/EB family member 1.
   
  
 0.622
SOWAHB
Sosondowah ankyrin repeat domain family member B.
      
 0.616
PIK3C2G
Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma.
      
 0.614
ENSSSUP00005030519
annotation not available
   
    0.593
CCDC42
Coiled-coil domain containing 42.
      
 0.538
CPA4
Carboxypeptidase A4.
      
 0.537
Your Current Organism:
Suricata suricatta
NCBI taxonomy Id: 37032
Other names: S. suricatta, meerkat, slender-tailed meerkat, suricate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.