STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PLAAPhospholipase A2 activating protein. (796 aa)    
Predicted Functional Partners:
YOD1
YOD1 deubiquitinase.
    
 
 0.970
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.965
NSFL1C
NSFL1 cofactor.
    
 
 0.918
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
   
 
 0.917
FAAP100
FA core complex associated protein 100.
   
 
 0.917
UBXN2B
UBX domain protein 2B.
    
 
 0.910
ENSSSUP00005004174
annotation not available
   
 
 0.897
VCP
Valosin containing protein.
   
 
 0.897
ENSSSUP00005003622
annotation not available
    
 0.881
UBXN11
UBX domain protein 11.
    
 
 0.877
Your Current Organism:
Suricata suricatta
NCBI taxonomy Id: 37032
Other names: S. suricatta, meerkat, slender-tailed meerkat, suricate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.