STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB40BRAB40B, member RAS oncogene family. (287 aa)    
Predicted Functional Partners:
WDR45B
WD repeat domain 45B.
   
  
 0.744
RILPL2
Rab interacting lysosomal protein like 2.
    
 
 0.735
WDR6
WD repeat domain 6.
   
    0.694
UTP15
UTP15 small subunit processome component.
   
    0.691
SETD3
SET domain containing 3, actin histidine methyltransferase.
   
    0.690
ELOC
Elongin C.
    
 
 0.687
SNU13
Small nuclear ribonucleoprotein 13.
   
 
  0.660
NIPSNAP1
Nipsnap homolog 1.
   
 
  0.648
NIPSNAP2
Nipsnap homolog 2.
   
 
  0.648
ENSSSUP00005030001
annotation not available
    
 
 0.643
Your Current Organism:
Suricata suricatta
NCBI taxonomy Id: 37032
Other names: S. suricatta, meerkat, slender-tailed meerkat, suricate
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.