STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LITAFLipopolysaccharide induced TNF factor. (255 aa)    
Predicted Functional Partners:
FANCM
FA complementation group M.
    
 0.906
ENSSSUP00005027888
annotation not available
  
  
0.891
NEDD4
NEDD4 E3 ubiquitin protein ligase.
    
 
 0.730
ZNF513
Zinc finger protein 513.
    
 0.627
CDIP1
Cell death inducing p53 target 1.
  
 
0.602
LYPD6
LY6/PLAUR domain containing 6.
   
  
 0.525
CARHSP1
Calcium regulated heat stable protein 1.
   
  
 0.525
H6PD
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
   
 
 0.521
RCBTB1
RCC1 and BTB domain containing protein 1.
      
 0.507
TTC7A
Tetratricopeptide repeat domain 7A.
      
 0.501
Your Current Organism:
Suricata suricatta
NCBI taxonomy Id: 37032
Other names: S. suricatta, meerkat, slender-tailed meerkat, suricate
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.