Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FixCDehydrogenases; Flavoproteins. (432 aa)    
Predicted Functional Partners:
FixX
Ferredoxin-like protein.
 
 
 0.974
FixX-2
Ferredoxin-like protein.
 
 
 0.890
FixX-3
Ferredoxin-like protein.
 
 
 0.886
FixA
Electron transfer flavoprotein, beta subunit.
 
 
 0.796
FixB
Electron transfer flavoprotein, alpha subunit.
  
 
 0.796
FixA-5
Electron transfer flavoprotein, beta subunit.
 
 
 0.449
FixA-3
Electron transfer flavoprotein, beta subunit.
 
 
 0.438
FixB-6
Electron transfer flavoprotein, alpha subunit.
 
 
 0.438
CaiA
acyl-CoA dehydrogenases.
  
  
 0.424
CaiD
enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.408
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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