STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0022Predicted glycosyltransferases. (274 aa)    
Predicted Functional Partners:
WcaJ-2
Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.697
FliY
Flagellum motor switch protein.
    
   0.622
TagG-3
ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.620
WcaA
Glycosyltransferases; Involved in cell wall biogenesis.
 
  
 0.434
PTH_2570
Hypothetical protein; Containing AslB (COG0641), arylsulfatase regulator (Fe-S oxidoreductase).
 
   
 0.426
TagH
ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.426
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.