Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
IclR | PTH_0027 | PTH_0030 | PTH_0027 | Transcriptional regulator. | Hypothetical protein. | 0.441 |
IclR | PTH_0028 | PTH_0030 | PTH_0028 | Transcriptional regulator. | Containing COG4624, iron only hydrogenase large subunit, C-terminal domain; COG2000, predicted Fe-S protein; and PAS domain. | 0.441 |
IclR | PTH_0029 | PTH_0030 | PTH_0029 | Transcriptional regulator. | Sigma factor PP2C-like phosphatase. | 0.468 |
PTH_0027 | IclR | PTH_0027 | PTH_0030 | Hypothetical protein. | Transcriptional regulator. | 0.441 |
PTH_0027 | PTH_0028 | PTH_0027 | PTH_0028 | Hypothetical protein. | Containing COG4624, iron only hydrogenase large subunit, C-terminal domain; COG2000, predicted Fe-S protein; and PAS domain. | 0.975 |
PTH_0027 | PTH_0029 | PTH_0027 | PTH_0029 | Hypothetical protein. | Sigma factor PP2C-like phosphatase. | 0.938 |
PTH_0028 | IclR | PTH_0028 | PTH_0030 | Containing COG4624, iron only hydrogenase large subunit, C-terminal domain; COG2000, predicted Fe-S protein; and PAS domain. | Transcriptional regulator. | 0.441 |
PTH_0028 | PTH_0027 | PTH_0028 | PTH_0027 | Containing COG4624, iron only hydrogenase large subunit, C-terminal domain; COG2000, predicted Fe-S protein; and PAS domain. | Hypothetical protein. | 0.975 |
PTH_0028 | PTH_0029 | PTH_0028 | PTH_0029 | Containing COG4624, iron only hydrogenase large subunit, C-terminal domain; COG2000, predicted Fe-S protein; and PAS domain. | Sigma factor PP2C-like phosphatase. | 0.937 |
PTH_0028 | PTH_0980 | PTH_0028 | PTH_0980 | Containing COG4624, iron only hydrogenase large subunit, C-terminal domain; COG2000, predicted Fe-S protein; and PAS domain. | Hypothetical protein. | 0.533 |
PTH_0029 | IclR | PTH_0029 | PTH_0030 | Sigma factor PP2C-like phosphatase. | Transcriptional regulator. | 0.468 |
PTH_0029 | PTH_0027 | PTH_0029 | PTH_0027 | Sigma factor PP2C-like phosphatase. | Hypothetical protein. | 0.938 |
PTH_0029 | PTH_0028 | PTH_0029 | PTH_0028 | Sigma factor PP2C-like phosphatase. | Containing COG4624, iron only hydrogenase large subunit, C-terminal domain; COG2000, predicted Fe-S protein; and PAS domain. | 0.937 |
PTH_0029 | PTH_0980 | PTH_0029 | PTH_0980 | Sigma factor PP2C-like phosphatase. | Hypothetical protein. | 0.422 |
PTH_0029 | PTH_1847 | PTH_0029 | PTH_1847 | Sigma factor PP2C-like phosphatase. | peptidase_U4, Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | 0.607 |
PTH_0980 | PTH_0028 | PTH_0980 | PTH_0028 | Hypothetical protein. | Containing COG4624, iron only hydrogenase large subunit, C-terminal domain; COG2000, predicted Fe-S protein; and PAS domain. | 0.533 |
PTH_0980 | PTH_0029 | PTH_0980 | PTH_0029 | Hypothetical protein. | Sigma factor PP2C-like phosphatase. | 0.422 |
PTH_1847 | PTH_0029 | PTH_1847 | PTH_0029 | peptidase_U4, Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family. | Sigma factor PP2C-like phosphatase. | 0.607 |