STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0078Hypothetical membrane protein. (339 aa)    
Predicted Functional Partners:
PTH_0095
Hypothetical protein; Containing partial ErfK (COG1376), Uncharacterized protein conserved in bacteria and partial LytE (COG1388), FOG: LysM repeat.
  
  
 0.959
KsgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.904
PTH_0442
Hypothetical membrane protein.
  
  
 0.783
IspE
4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.752
PTH_0081
Uncharacterized protein conserved in bacteria.
       0.675
PTH_1117
Hypothetical protein.
   
  
 0.621
TatD
Mg-dependent DNase.
     
 0.611
PTH_1854
Uncharacterized protein conserved in bacteria.
 
     0.589
PTH_1853
Uncharacterized protein conserved in bacteria.
 
     0.575
PTH_0083
Hypothetical protein.
 
     0.528
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.