SpoIID protein (Pelotomaculum thermopropionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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[Homology]

Score

SpoIID

Sporulation protein and related proteins, membrane protein. (314 aa)

Predicted Functional Partners:

PTH_1615

0.769

PTH_1616

0.683

PTH_0124

0.653

PTH_0122

0.637

PTH_1010

0.613

PTH_1605

0.610

PTH_0871

0.547

HimA

0.487

PTH_0125

0.445

AbrB-2

0.430

Your Current Organism:

Pelotomaculum thermopropionicum

NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AbrB-2	HimA	PTH_0119	PTH_0121	Regulators of stationary/sporulation gene expression.	Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	0.573
AbrB-2	PTH_0122	PTH_0119	PTH_0122	Regulators of stationary/sporulation gene expression.	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	0.461
AbrB-2	PTH_0124	PTH_0119	PTH_0124	Regulators of stationary/sporulation gene expression.	Hypothetical protein.	0.828
AbrB-2	PTH_0871	PTH_0119	PTH_0871	Regulators of stationary/sporulation gene expression.	Hypothetical membrane protein.	0.772
AbrB-2	PTH_1605	PTH_0119	PTH_1605	Regulators of stationary/sporulation gene expression.	Hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.	0.797
AbrB-2	PTH_1615	PTH_0119	PTH_1615	Regulators of stationary/sporulation gene expression.	Hypothetical membrane protein.	0.597
AbrB-2	SpoIID	PTH_0119	PTH_0123	Regulators of stationary/sporulation gene expression.	Sporulation protein and related proteins, membrane protein.	0.430
HimA	AbrB-2	PTH_0121	PTH_0119	Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	Regulators of stationary/sporulation gene expression.	0.573
HimA	PTH_0122	PTH_0121	PTH_0122	Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	0.815
HimA	PTH_0125	PTH_0121	PTH_0125	Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	Hypothetical membrane protein.	0.588
HimA	SpoIID	PTH_0121	PTH_0123	Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	Sporulation protein and related proteins, membrane protein.	0.487
PTH_0122	AbrB-2	PTH_0122	PTH_0119	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	Regulators of stationary/sporulation gene expression.	0.461
PTH_0122	HimA	PTH_0122	PTH_0121	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.	0.815
PTH_0122	PTH_0124	PTH_0122	PTH_0124	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	Hypothetical protein.	0.657
PTH_0122	PTH_0125	PTH_0122	PTH_0125	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	Hypothetical membrane protein.	0.709
PTH_0122	PTH_1010	PTH_0122	PTH_1010	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	Hypothetical protein; Containing partial DnaC (COG1484), DNA replication protein.	0.418
PTH_0122	SpoIID	PTH_0122	PTH_0123	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	Sporulation protein and related proteins, membrane protein.	0.637
PTH_0124	AbrB-2	PTH_0124	PTH_0119	Hypothetical protein.	Regulators of stationary/sporulation gene expression.	0.828
PTH_0124	PTH_0122	PTH_0124	PTH_0122	Hypothetical protein.	Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).	0.657
PTH_0124	PTH_0125	PTH_0124	PTH_0125	Hypothetical protein.	Hypothetical membrane protein.	0.972

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