STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0147Predicted ATPase; AAA+ superfamily. (371 aa)    
Predicted Functional Partners:
PTH_2698
Predicted nucleic acid-binding protein; Contains PIN domain.
  
     0.626
PTH_0694
Predicted nucleic acid-binding protein; Contains PIN domain.
  
     0.621
PTH_2378
Hypothetical protein.
  
     0.602
PTH_0146
Mn-containing catalase.
       0.554
PTH_2783
Predicted nucleic acid-binding protein; Contains PIN domain.
  
     0.546
TolC
Outer membrane protein.
  
     0.522
PTH_1774
Hypothetical protein.
  
     0.521
VirD4
Type IV secretory pathway, VirD4 components.
  
     0.521
PTH_0082
Hypothetical protein; Containing partial COG1216 predicted glycosyltransferases.
  
     0.506
PTH_0148
Hypothetical protein; Containing TPR Domain.
       0.493
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.