Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VapCPredicted nucleic acid-binding protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (145 aa)    
Predicted Functional Partners:
AbrB-3
Regulators of stationary/sporulation gene expression.
     
 0.779
PTH_0694
Predicted nucleic acid-binding protein; Contains PIN domain.
  
     0.648
PTH_0705
Uncharacterized conserved protein.
 
   
 0.613
PTH_2698
Predicted nucleic acid-binding protein; Contains PIN domain.
 
   
 0.613
PTH_2783
Predicted nucleic acid-binding protein; Contains PIN domain.
 
   
 0.568
PTH_2550
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.518
LolE
ABC-type transport system, involved in lipoprotein release, permeasecomponent.
       0.516
PTH_0703
Predicted nucleic acid-binding protein; Contains PIN domain.
  
     0.495
PTH_0147
Predicted ATPase; AAA+ superfamily.
  
     0.493
SalX-2
ABC-type antimicrobial peptide transport system, ATPase component.
       0.457
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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