Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LolEABC-type transport system, involved in lipoprotein release, permeasecomponent. (395 aa)    
Predicted Functional Partners:
SalX-2
ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.988
SalX
ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.970
SalX-3
ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.970
PTH_1559
Hypothetical membrane protein.
   
 
 0.788
AcrA-2
Membrane-fusion protein.
 
   
 0.760
AcrA
Membrane-fusion protein.
 
   
 0.754
PTH_0376
Predicted membrane protein.
  
     0.624
CheR
Methylase of chemotaxis methyl-accepting proteins.
      
 0.618
CheW
Chemotaxis signal transduction protein.
      
 0.618
PTH_0142
Hypothetical protein; Containing predicted ATPase (COG3899), FhlA, FOG: GAF domain (COG2203), S_TKc, serine/threonine protein kinases, catalytic domain, His Kinase A (phosphoacceptor), HATPase_c, Histidine kinase-like ATPase, REC, signal receiver domain, and ArcB, FOG: HPt domain (COG2198).
  
 
 0.564
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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