Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PTH_0429Hypothetical membrane protein; Containing GvpG, Gas vesicle protein G. (86 aa)    
Predicted Functional Partners:
PTH_0425
Hypothetical membrane protein.
     
 0.832
PTH_0430
Hypothetical protein; Containing GvpL_GvpF, Gas vesicle synthesis protein GvpL/GvpF.
     
 0.823
PTH_0424
Hypothetical protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
     
 0.806
PTH_0427
Hypothetical membrane protein.
       0.790
PTH_0428
Containing Gas vesicle synthesis protein GvpL/GvpF.
       0.790
PTH_0426
Containing Gas vesicle synthesis protein GvpL/GvpF.
       0.773
SpoVK
ATPase; AAA+ class; Belongs to the AAA ATPase family.
       0.583
PTH_0432
MoxR-like ATPase.
     
 0.564
gvpA
Hypothetical membrane protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
     
 0.427
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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