STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SpoVKATPase; AAA+ class; Belongs to the AAA ATPase family. (638 aa)    
Predicted Functional Partners:
PTH_0432
MoxR-like ATPase.
 
     0.917
PTH_0430
Hypothetical protein; Containing GvpL_GvpF, Gas vesicle synthesis protein GvpL/GvpF.
 
     0.859
PTH_0426
Containing Gas vesicle synthesis protein GvpL/GvpF.
 
     0.854
PTH_0428
Containing Gas vesicle synthesis protein GvpL/GvpF.
 
     0.850
PTH_0424
Hypothetical protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
     0.847
PTH_0427
Hypothetical membrane protein.
 
     0.840
PTH_0425
Hypothetical membrane protein.
 
     0.833
gvpA
Hypothetical membrane protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
     0.791
PTH_0429
Hypothetical membrane protein; Containing GvpG, Gas vesicle protein G.
       0.584
CbiO-3
ABC-type cobalt transport system, ATPase component.
  
     0.544
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.