Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RfaG-3Glycosyltransferase. (403 aa)    
Predicted Functional Partners:
GDB1
Glycogen debranching enzyme.
 
 
 0.927
PTH_2228
Uncharacterized conserved protein; Belongs to the glycosyl hydrolase 57 family.
 
 
  
 0.888
OtsB
Trehalose-6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
 
 0.831
OtsA
Trehalose-6-phosphate synthase.
 
   
 0.796
PTH_2565
Hypothetical membrane protein.
  
     0.597
FrhB
Coenzyme F420-reducing hydrogenase, beta subunit.
  
     0.546
PTH_0562
Hypothetical membrane protein.
 
     0.511
WcaJ-2
Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.484
RfaG-9
Glycosyltransferase.
  
     0.462
GlgB
1,4-alpha-glucan branching enzyme.
   
 0.459
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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