Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0563Hypothetical protein. (270 aa)    
Predicted Functional Partners:
CDA1
Predicted xylanase/chitin deacetylase.
 
    
 0.903
PTH_1880
Hypothetical membrane protein; Containing CDA1 region (COG0726).
 
    
 0.896
PTH_0473
Hypothetical membrane protein; Containing Polysacc_deac_1, Polysaccharide deacetylase.
 
    
 0.768
PTH_0562
Hypothetical membrane protein.
 
  
 0.562
PblB
Phage-related protein.
 
    0.541
PTH_0765
Hypothetical signaling protein; Containing TolB (COG0823), periplasmic component of the Tol biopolymer transport system.
 
    0.492
PTH_1590
Hypothetical membrane protein.
  
     0.471
PTH_2177
RTX toxins and related Ca2+-binding proteins.
 
    0.455
PTH_0564
Hypothetical membrane protein.
       0.448
PTH_0419
Hypothetical membrane protein; Containing three S-layer homology SLH) domains.
 
     0.440
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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