STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0573Hypothetical membrane protein. (266 aa)    
Predicted Functional Partners:
TauA-2
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components.
  
  
 0.795
TauC-2
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
     
 0.788
PTH_0142
Hypothetical protein; Containing predicted ATPase (COG3899), FhlA, FOG: GAF domain (COG2203), S_TKc, serine/threonine protein kinases, catalytic domain, His Kinase A (phosphoacceptor), HATPase_c, Histidine kinase-like ATPase, REC, signal receiver domain, and ArcB, FOG: HPt domain (COG2198).
  
 
 0.677
TauB-2
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
     
 0.666
TauC-3
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components.
       0.656
PTH_0571
Hypothetical membrabe protein.
       0.610
PTH_0569
Hypothetical protein.
       0.564
PTH_0577
Hypothetical protein; Containing DsrE (COG1553), uncharacterized conserved protein involved in intracellular sulfur reduction.
  
    0.564
PTH_0570
Predicted permease.
       0.492
GltB-2
Glutamate synthase domain 2.
  
  
 0.483
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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