Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AraJ-3Arabinose efflux permease. (369 aa)    
Predicted Functional Partners:
Bfr
Bacterioferritin; Cytochrome b1.
 
   
 0.761
FrhB
Coenzyme F420-reducing hydrogenase, beta subunit.
  
    0.757
PTH_0180
Hypothetical protein.
  
     0.694
PTH_0194
Hypothetical membrane protein.
  
     0.651
vapC-2
Predicted nucleic acid-binding protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.596
PTH_0562
Hypothetical membrane protein.
  
     0.579
PTH_0626
Hypothetical membrane protein.
     
 0.570
PTH_2482
Hypothetical membrane protein.
  
     0.558
PTH_1879
Hypothetical membrane protein.
  
     0.547
CitA
Signal transduction histidine kinase; Regulating citrate/malate metabolism.
  
     0.484
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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