Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BfrBacterioferritin; Cytochrome b1. (157 aa)    
Predicted Functional Partners:
AraJ-3
Arabinose efflux permease.
 
   
 0.761
PTH_0943
Hypothetical membrane protein.
   
  
 0.642
SpoIIAA-2
Anti-anti-sigma regulatory factor; Antagonist of anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
   
  
 0.617
PTH_2276
Hypothetical protein; Containing SpoIIAA (COG1366), anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
   
  
 0.617
PTH_0006
Hypothetical membrane protein; Containing HAMP and methyl-accepting chemotaxis-like domains.
   
    0.563
Tar-5
Methyl-accepting chemotaxis protein; Containing COG5278, predicted periplasmic ligand-binding sensor domain.
   
    0.563
PTH_0562
Hypothetical membrane protein.
  
     0.523
PTH_0194
Hypothetical membrane protein.
  
     0.521
RsbU
Serine phosphatase RsbU; Regulator of sigma subunit.
   
    0.443
PTH_0180
Hypothetical protein.
  
     0.435
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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