Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AmtBAmmonia permease. (472 aa)    
Predicted Functional Partners:
GlnK
Nitrogen regulatory protein PII.
 
 0.999
GltB-2
Glutamate synthase domain 2.
 
  
 0.817
GdhA
Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.706
nadE
Hypothetical protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.633
BaeS-3
Signal transduction histidine kinase.
 
 
 0.592
PTH_1422
Hypothetical membrane protein; Containing AtoS (COG2202), FOG: PAS/PAC domain, NtrB (COG3852), signal transduction histidine kinase, nitrogen specific and PAS domain.
  
 
 0.545
NtrB
Signal transduction histidine kinase; Nitrogenspecific.
  
 
 0.531
NtrB-2
Signal transduction histidine kinase; Nitrogen specific.
  
 
 0.531
PTH_1778
Membrane signaling protein; Containing NtrB (COG3852), signal transduction histidine kinase.
  
 
 0.531
AspA
Aspartate ammonia-lyase.
   
  
 0.526
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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