Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PinR-2Site-specific recombinases; DNA invertase Pin homologs. (533 aa)    
Predicted Functional Partners:
PTH_0692
Hypothetical protein.
       0.773
PTH_2396
Transposase and inactivated derivatives.
  
     0.626
PTH_1997
Hypothetical protein.
  
     0.617
PTH_2882
Hypothetical protein; Belongs to the 'phage' integrase family.
  
  
 0.599
PTH_0694
Predicted nucleic acid-binding protein; Contains PIN domain.
 
     0.548
PTH_1526
Hypothetical protein.
  
     0.522
VirD4
Type IV secretory pathway, VirD4 components.
 
    0.442
PTH_2403
Predicted ATPase; AAA+ superfamily.
  
     0.403
PTH_0863
Predicted ATPase; AAA+ superfamily.
  
     0.402
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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