Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0712Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily). (333 aa)    
Predicted Functional Partners:
PTH_1924
Uncharacterized protein; Predicted to be involved in DNA repair.
   
 
 0.787
PTH_1928
Predicted hydrolase; HD superfamily (permuted catalytic motifs).
 
 
 
 0.786
PTH_0713
Hypothetical protein.
       0.785
PTH_1923
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
 
 
 
 0.778
PTH_0714
Hypothetical protein.
       0.755
PTH_1926
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
 
 
 
 0.698
PTH_1927
Uncharacterized protein; Predicted to be involved in DNA repair (RAMP superfamily).
 
 
 
 0.677
PTH_0709
Hypothetical protein.
   
 
 0.672
PTH_0708
Hypothetical protein; Containing partial COG1604, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
   
 
 0.632
PTH_0707
Hypothetical protein; Containing partial COG1367, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily).
   
 
 0.599
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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