STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0750Hypothetical protein; Containing predicted hydrocarbon binding protein (contains V4R domain) resion (COG1719). (340 aa)    
Predicted Functional Partners:
RAD55
RecA-superfamily ATPase; Implicated in signal transduction.
       0.773
RAD55-2
RecA-superfamily ATPase; Implicated in signal transduction.
       0.773
PTH_0751
Hypothetical protein.
       0.773
NtrB-2
Signal transduction histidine kinase; Nitrogen specific.
       0.741
PTH_0827
Fe-S oxidoreductase.
  
  
 0.701
PTH_1512
Fe-S oxidoreductase.
  
  
 0.701
PTH_1555
Fe-S oxidoreductase.
  
  
 0.701
PTH_0142
Hypothetical protein; Containing predicted ATPase (COG3899), FhlA, FOG: GAF domain (COG2203), S_TKc, serine/threonine protein kinases, catalytic domain, His Kinase A (phosphoacceptor), HATPase_c, Histidine kinase-like ATPase, REC, signal receiver domain, and ArcB, FOG: HPt domain (COG2198).
     
 0.537
PTH_1306
Zn-dependent dipeptidase, microsomal dipeptidase homolog.
  
  
 0.499
Mdh
Malate/lactate dehydrogenases; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
       0.438
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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