Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0764Hypothetical membrane protein. (326 aa)    
Predicted Functional Partners:
TolC
Outer membrane protein.
     0.805
PTH_2611
Hypothetical membrane protein; Containing 2x S-layer homology domain.
 
    0.783
PTH_2797
Hypothetical protein; Containing S-layer homology domain.
 
  
 0.782
PTH_0614
Membrane protein; Containing SLH domain.
 
   
 0.779
PTH_2086
Hypothetical protein.
 
   
 0.776
PTH_0186
Hypothetical membrane protein; SLH, S-layer homology domain.
  
     0.774
PTH_0193
Hypothetical protein; Containing SLH, S-layer homology domain.
 
   
 0.774
PTH_0419
Hypothetical membrane protein; Containing three S-layer homology SLH) domains.
 
   
 0.771
PTH_0265
Hypothetical membrane protein.
  
     0.770
PTH_2362
Hypothetical protein.
  
     0.768
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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