STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0769Hypothetical membrane protein. (479 aa)    
Predicted Functional Partners:
PTH_0770
Hypothetical membrane protein.
 
     0.947
PTH_0772
Hypothetical membrane protein.
 
     0.928
RpoE-3
DNA-directed RNA polymerase specialized sigma subunit; Sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.863
CcmA-2
ABC-type multidrug transport system, ATPase component.
 
     0.816
PspA
Suppresse phage shock protein A; (IM30), sigma54-dependent transcription.
  
     0.716
PTH_1483
Hypothetical membrane protein; Containing ISOPREN_C2_like domain and SLH, S-layer homology domain.
 
  
 0.488
RbsB-2
ABC-type sugar transport system, periplasmic component.
  
     0.480
PTH_2640
Containing FhlA (COG2203), FOG: GAF domain and partial COG4191, signal transduction histidine kinase regulating C4-dicarboxylate transport system.
 
     0.457
PTH_0773
Hypothetical membrane protein.
  
    0.454
PTH_0774
Hypothetical membrane protein.
       0.443
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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