Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
TagGABC-type polysaccharide/polyol phosphate export systems, permease component. (274 aa)    
Predicted Functional Partners:
CcmA-3
ABC-type multidrug transport system, ATPase component.
  
 0.964
CcmA-5
ABC-type multidrug transport system, ATPase component.
  
 0.823
MarR-3
Transcriptional regulator.
       0.773
CcmA-4
ABC-type multidrug transport system, ATPase component.
  
 0.764
CcmA-7
ABC-type multidrug transport system, ATPase component.
 
  
 0.650
CcmA-6
ABC-type multidrug transport system, ATPase component.
  
 0.633
PTH_1475
ABC-type multidrug transport system, permease component.
  
  
 
0.528
TagG-2
ABC-type polysaccharide/polyolphosphate export systems, permeasecomponent.
  
  
 
0.517
PTH_0780
Hypothetical protein; Containing ferredoxin region (COG1146).
 
     0.456
PTH_0377
Predicted metal-dependent membrane protease.
   
  
 0.455
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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