Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CcmA-3ABC-type multidrug transport system, ATPase component. (323 aa)    
Predicted Functional Partners:
TagG
ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
 0.964
PTH_1514
ABC-type multidrug transport system, permease component.
  
 0.954
PTH_2804
ABC-type multidrug transport system, permease component.
  
 0.838
PTH_1475
ABC-type multidrug transport system, permease component.
 
  
 0.789
MarR-3
Transcriptional regulator.
     
 0.776
LivM-2
ABC-type branched-chain amino acid transport system, permeasecomponent; Belongs to the binding-protein-dependent transport system permease family.
 
      0.730
TagG-2
ABC-type polysaccharide/polyolphosphate export systems, permeasecomponent.
 
  
 0.713
LivM
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
      0.708
SalY
ABC-type antimicrobial peptide transport system, permease component.
 
    
 0.694
SalY-2
ABC-type antimicrobial peptide transport system, permease component.
 
    
 0.680
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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