Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0863Predicted ATPase; AAA+ superfamily. (885 aa)    
Predicted Functional Partners:
PTH_0860
Adenine-specific DNA methylase; Containing a Zn-ribbon.
 
     0.913
PTH_2404
Adenine-specific DNA methylase; Containing a Zn-ribbon.
 
     0.785
PTH_2441
Hypothetical DNA/RNA helicases; Containing partial HepA (COG0553), superfamily II DNA/RNA helicases, SNF2 family.
 
     0.784
PTH_0858
Hypothetical protein; Containing superfamily II DNA/RNA helicases region (COG0553 HepA).
 
     0.780
PTH_0861
Hypothetical protein.
       0.693
PTH_0862
Hypothetical protein.
       0.693
PTH_0716
Hypothetical DNA/RNA helicase; Containing partial HepA (COG0553), superfamily II DNA/RNA helicases, SNF2 family.
 
     0.593
RAD55-2
RecA-superfamily ATPase; Implicated in signal transduction.
  
     0.556
PTH_1997
Hypothetical protein.
  
     0.536
PTH_0160
Hypothetical protein.
  
     0.458
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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