RpoD protein (Pelotomaculum thermopropionicum)

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RpoD

DNA-directed RNA polymerase, sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (363 aa)

Predicted Functional Partners:

DnaG

0.994

RpoB

0.973

RpoA

0.969

RpoC

0.955

RpoZ

0.910

PTH_1521

0.819

PTH_0287

0.804

whiA

0.780

SoxR

0.766

PTH_0700

0.689

Your Current Organism:

Pelotomaculum thermopropionicum

NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DnaG	RpoA	PTH_0906	PTH_0349	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.461
DnaG	RpoB	PTH_0906	PTH_0312	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.552
DnaG	RpoC	PTH_0906	PTH_0313	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.515
DnaG	RpoD	PTH_0906	PTH_0907	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	DNA-directed RNA polymerase, sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.994
PTH_0287	RpoA	PTH_0287	PTH_0349	Transcriptional regulator; Similar to M. xanthus CarD.	DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.844
PTH_0287	RpoB	PTH_0287	PTH_0312	Transcriptional regulator; Similar to M. xanthus CarD.	DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.854
PTH_0287	RpoC	PTH_0287	PTH_0313	Transcriptional regulator; Similar to M. xanthus CarD.	DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.857
PTH_0287	RpoD	PTH_0287	PTH_0907	Transcriptional regulator; Similar to M. xanthus CarD.	DNA-directed RNA polymerase, sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.804
PTH_0287	RpoZ	PTH_0287	PTH_1794	Transcriptional regulator; Similar to M. xanthus CarD.	DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.884
PTH_0700	RpoA	PTH_0700	PTH_0349	Hypothetical protein.	DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.755
PTH_0700	RpoB	PTH_0700	PTH_0312	Hypothetical protein.	DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.770
PTH_0700	RpoC	PTH_0700	PTH_0313	Hypothetical protein.	DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.755
PTH_0700	RpoD	PTH_0700	PTH_0907	Hypothetical protein.	DNA-directed RNA polymerase, sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.689
PTH_0700	RpoZ	PTH_0700	PTH_1794	Hypothetical protein.	DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.739
PTH_1521	RpoA	PTH_1521	PTH_0349	Uncharacterized protein conserved in bacteria.	DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.878
PTH_1521	RpoB	PTH_1521	PTH_0312	Uncharacterized protein conserved in bacteria.	DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.858
PTH_1521	RpoC	PTH_1521	PTH_0313	Uncharacterized protein conserved in bacteria.	DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.832
PTH_1521	RpoD	PTH_1521	PTH_0907	Uncharacterized protein conserved in bacteria.	DNA-directed RNA polymerase, sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.819
PTH_1521	RpoZ	PTH_1521	PTH_1794	Uncharacterized protein conserved in bacteria.	DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.830
PTH_1521	SoxR	PTH_1521	PTH_2704	Uncharacterized protein conserved in bacteria.	Predicted transcriptional regulator.	0.499

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