STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0914Hyporthetical protein; Containing COG0327 and COG3323 domain; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (372 aa)    
Predicted Functional Partners:
PTH_0913
Predicted SAM-dependent methyltransferase.
 
  
 0.992
PTH_0915
Zn-ribbon protein, possibly nucleic acid-binding.
  
  
 0.873
HisC
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
  
  
 0.733
HisC-2
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
 0.733
PepD
Di- and tripeptidases.
  
    0.637
RnhA
Ribonuclease HI.
  
  
 0.619
RnhA-2
Ribonuclease HI.
  
  
 0.619
Nfo
Endonuclease IV.
     
 0.597
PolA
DNA polymerase I - 3'-5' exonuclease and polymerase domains; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
    0.561
PTH_0901
Predicted transcriptional regulator; Containing COG0517, FOG:CBS domain.
 
   
 0.559
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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