Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_0929Hypothetical membrane protein. (887 aa)    
Predicted Functional Partners:
PTH_0168
Hypothetical membrane protein.
 
    0.779
PflX
Uncharacterized Fe-S protein; Homolog of pyruvate formate lyase activating proteins.
       0.773
PTH_0930
Hypothetical protein.
       0.773
PTH_2778
Hypothetical protein; Containing partial WcaK (COG2327), uncharacterized conserved protein.
 
     0.771
PTH_0764
Hypothetical membrane protein.
  
     0.766
PTH_2496
Hypothetical membrane protein.
  
     0.765
PTH_0933
Hypothetical membrane protein.
  
     0.763
PTH_2086
Hypothetical protein.
  
     0.758
PTH_2339
Hypothetical protein.
  
     0.754
PTH_2788
Hypothetical protein.
  
     0.752
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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