STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YSH1-2Predicted exonuclease; The beta-lactamase fold involved in RNA processing. (519 aa)    
Predicted Functional Partners:
YSH1
Predicted exonuclease of the beta-lactamase fold; Involved in RNA processing.
  
  
 
0.916
rnj
Predicted hydrolase; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
     
 
0.900
FimT
Tfp pilus assembly protein FimT.
 
     0.721
PTH_0710
Hypothetical protein; Containing partial COG3547, transposase and inactivated derivatives.
  
     0.631
PTH_2606
Containing COG3547, transposase and inactivated derivatives.
  
     0.613
SbcD
DNA repair exonuclease.
  
     0.599
PTH_0084
Hypothetical protein.
  
     0.585
PTH_0933
Hypothetical membrane protein.
       0.581
rny
Hypothetical protein; Endoribonuclease that initiates mRNA decay.
  
 
 0.544
PTH_2396
Transposase and inactivated derivatives.
  
     0.493
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.