Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DdpAABC-type dipeptide transport system, periplasmic component. (495 aa)    
Predicted Functional Partners:
DppB
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
DppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.998
PTH_1485
ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 0.983
DdpA-2
ABC-type dipeptide transport system, periplasmic component.
  
  
 
0.928
MmcM
Related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
  
 0.778
CbiO-4
ABC-type cobalt transport system, ATPase component.
 
 0.684
HisJ
ABC-type amino acid transport/signal transduction system.
  
 
 0.643
PTH_2281
Beta-glucosidase-related glycosidases and D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
 
  
 0.518
PTH_0940
Hypothetical protein.
       0.505
Nfo
Endonuclease IV.
       0.451
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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