Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_1071Hypothetical transcriptional regulator; Containing two HipB (COG1476) domains. (255 aa)    
Predicted Functional Partners:
PTH_1072
Predicted membrane protein.
       0.727
FtsI-2
Cell division protein; FtsI/penicillin-binding protein 2.
  
  
 0.614
PTH_0725
Hypothetical protein; Containing HipB (COG1396), predicted transcriptional regulator and COG2856, predicted Zn peptidase.
  
  
 0.600
PTH_0142
Hypothetical protein; Containing predicted ATPase (COG3899), FhlA, FOG: GAF domain (COG2203), S_TKc, serine/threonine protein kinases, catalytic domain, His Kinase A (phosphoacceptor), HATPase_c, Histidine kinase-like ATPase, REC, signal receiver domain, and ArcB, FOG: HPt domain (COG2198).
  
 
 0.578
FimT
Tfp pilus assembly protein FimT.
 
    0.571
PTH_1829
Hypothetical protein.
  
    0.567
PheA
Prephenate dehydratase.
     
 0.497
PTH_2516
Hypothetical protein.
  
     0.486
PTH_1303
Hypothetical protein; Containing COG1431, Uncharacterized protein containing piwi/argonaute domain.
  
     0.484
PspA
Suppresse phage shock protein A; (IM30), sigma54-dependent transcription.
  
    0.482
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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