Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RfaG-5Glycosyltransferase. (403 aa)    
Predicted Functional Partners:
WcaJ
Sugar transferases; Involved in lipopolysaccharide synthesis.
  
 0.954
WcaG
Nucleoside-diphosphate-sugar epimerases.
 
  
 0.935
RfaG-6
Glycosyltransferase.
 
    
0.839
Mrp-2
ATPase involved in chromosome partitioning.
 
  
 0.812
RfaG-9
Glycosyltransferase.
     0.782
PTH_1093
Capsular polysaccharide biosynthesis protein.
 
  
 0.760
PTH_1099
Hypothetical protein; Containing partial COG3146, Uncharacterized protein conserved in bacteria.
 
     0.709
WcaG-2
Nucleoside-diphosphate-sugar epimerases.
 
  
 0.706
WcaJ-2
Sugar transferases involved in lipopolysaccharide synthesis.
  
 0.678
PTH_1082
Hypothetical protein; Containing partial RfaG (COG0438), glycosyltransferase.
 
     0.546
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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