STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_1098Uncharacterized conserved protein. (148 aa)    
Predicted Functional Partners:
PTH_1099
Hypothetical protein; Containing partial COG3146, Uncharacterized protein conserved in bacteria.
 
   
 0.652
WcaJ
Sugar transferases; Involved in lipopolysaccharide synthesis.
       0.591
WcaG-2
Nucleoside-diphosphate-sugar epimerases.
       0.547
WcaG
Nucleoside-diphosphate-sugar epimerases.
       0.476
RfaG-5
Glycosyltransferase.
       0.465
RfaG-6
Glycosyltransferase.
       0.455
PTH_1102
Hypothetical protein; Containing fibronectin type 3 domain.
 
  
 0.428
PTH_1093
Capsular polysaccharide biosynthesis protein.
       0.415
Mrp-2
ATPase involved in chromosome partitioning.
       0.413
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.