Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_1099Hypothetical protein; Containing partial COG3146, Uncharacterized protein conserved in bacteria. (353 aa)    
Predicted Functional Partners:
PTH_1102
Hypothetical protein; Containing fibronectin type 3 domain.
 
     0.852
WcaJ
Sugar transferases; Involved in lipopolysaccharide synthesis.
      0.838
WcaG-2
Nucleoside-diphosphate-sugar epimerases.
 
     0.770
DnaB
Replicative DNA helicase.
  
    0.739
PTH_2197
Hypothetical protein.
  
     0.735
DnaG-2
DNA primase; Bacterial type.
  
     0.715
PblB
Phage-related protein.
  
     0.711
RfaG-5
Glycosyltransferase.
 
     0.709
PTH_0622
Predicted archaeal sugar kinases.
  
     0.707
PTH_2177
RTX toxins and related Ca2+-binding proteins.
  
     0.707
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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