Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
PTH_1233Uncharacterized protein conserved in bacteria. (366 aa)    
Predicted Functional Partners:
PTH_1234
Activator of 2-hydroxyglutaryl-CoA dehydratase; HSP70-class ATPase domain.
   
 0.994
PTH_1325
Activator of 2-hydroxyglutaryl-CoA dehydratase; HSP70-class ATPase domain.
   
 0.977
PTH_0568
Activator of 2-hydroxyglutaryl-CoA dehydratase; HSP70-class ATPase domain.
   
 0.939
PTH_1327
Uncharacterized protein conserved in bacteria.
   
0.931
PTH_0789
Activator of 2-hydroxyglutaryl-CoA dehydratase; HSP70-class ATPase domain.
   
 0.856
PTH_1232
Uncharacterized protein conserved in bacteria.
 
   
0.842
PTH_1230
Hypothetical membrane protein.
       0.472
GerA
Bacillus/Clostridium GerA spore germination protein.
       0.472
PTH_1229
Hypothetical protein; Containing partial FabH (COG0332), 3-oxoacyl-[acyl-carrier-protein].
       0.447
LysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.437
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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