STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTH_1234Activator of 2-hydroxyglutaryl-CoA dehydratase; HSP70-class ATPase domain. (324 aa)    
Predicted Functional Partners:
PTH_1233
Uncharacterized protein conserved in bacteria.
   
 0.994
PTH_1232
Uncharacterized protein conserved in bacteria.
     0.992
PTH_1327
Uncharacterized protein conserved in bacteria.
     0.977
PTH_1326
Uncharacterized protein conserved in bacteria.
   
 0.945
HgdB
benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit; BcrC/BadD/HgdB.
 
 0.671
HgdB-2
benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit; BcrC/BadD/HgdB.
 
 0.596
PTH_0245
Hypothetical protein; Containing OmpR response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain (COG0745).
  
 
 0.536
GerA
Bacillus/Clostridium GerA spore germination protein.
       0.489
PTH_1230
Hypothetical membrane protein.
       0.487
PTH_1229
Hypothetical protein; Containing partial FabH (COG0332), 3-oxoacyl-[acyl-carrier-protein].
  
    0.477
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.