Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTH_1303Hypothetical protein; Containing COG1431, Uncharacterized protein containing piwi/argonaute domain. (190 aa)    
Predicted Functional Partners:
PTH_1304
Uncharacterized protein conserved in bacteria.
       0.815
PTH_0111
Uncharacterized protein conserved in bacteria.
  
     0.766
PTH_1829
Hypothetical protein.
  
     0.744
rny
Hypothetical protein; Endoribonuclease that initiates mRNA decay.
       0.699
LonB-2
Predicted ATP-dependent protease.
  
     0.681
PTH_0758
Hypothetical protein; Containing uncharacterized conserved region (COG3881).
  
     0.644
PTH_2839
Hypothetical membrane protein.
  
     0.618
PTH_1786
Hypothetical signaling protein; Containing forkhead associated domain (FHA) (COG1716).
  
     0.580
PTH_0898
Hypothetical membrane protein.
  
     0.578
SpoVS
Uncharacterized protein conserved in bacteria.
       0.553
Your Current Organism:
Pelotomaculum thermopropionicum
NCBI taxonomy Id: 370438
Other names: P. thermopropionicum SI, Pelotomaculum thermopropionicum SI, Pelotomaculum thermopropionicum str. SI, Pelotomaculum thermopropionicum strain SI
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